# Handling Metadata in RNeXML

#### Carl Boettiger

#### Scott Chamberlain

#### Rutger Vos

#### Hilmar Lapp

## Writing NeXML metadata

The `add_basic_meta()` function takes as input an existing `nexml` object (like the other `add_` functions, if none is provided it will create one), and at the time of this writing any of the following parameters: `title`, `description`, `creator`, `pubdate`, `rights`, `publisher`, `citation`. Other metadata elements and corresponding parameters may be added in the future.

Load the packages and data:

    library('RNeXML')
    data(bird.orders)

Create an `nexml` object for the phylogeny `bird.orders` and add appropriate metadata:

    birds <- add_trees(bird.orders)
    birds <- add_basic_meta(
      title = "Phylogeny of the Orders of Birds From Sibley and Ahlquist",

      description = "This data set describes the phylogenetic relationships of the
         orders of birds as reported by Sibley and Ahlquist (1990). Sibley
         and Ahlquist inferred this phylogeny from an extensive number of
         DNA/DNA hybridization experiments. The ``tapestry'' reported by
         these two authors (more than 1000 species out of the ca. 9000
         extant bird species) generated a lot of debates.

         The present tree is based on the relationships among orders. The
         branch lengths were calculated from the values of Delta T50H as
         found in Sibley and Ahlquist (1990, fig. 353).",

      citation = "Sibley, C. G. and Ahlquist, J. E. (1990) Phylogeny and
         classification of birds: a study in molecular evolution. New
         Haven: Yale University Press.",

      creator = "Sibley, C. G. and Ahlquist, J. E.",
        nexml=birds)

Instead of a literal string, citations can also be provided in R’s `bibentry` type, which is the one in which R package citations are obtained:

    birds <- add_basic_meta(citation = citation("ape"), nexml = birds)

## Taxonomic identifiers

RNeXML now uses `taxald` for fast look-up of taxonomic information. If a unique match is found, a metadata annotation is added to the taxon providing the unique URI to the taxonomic unit.

    birds <- taxize_nexml(birds, "NCBI")

If no perfect match is found, the user is warned to check for possible typographic errors in the taxonomic labels provided.

## Custom metadata extensions

We can get a list of namespaces along with their prefixes from the `nexml` object:

    prefixes <- get_namespaces(birds)
    prefixes["dc"]

                                    dc
    "http://purl.org/dc/elements/1.1/"

We create a `meta` element containing this annotation using the `meta` function:

    modified <- meta(property = "prism:modificationDate", content = "2013-10-04")

We can add this annotation to our existing `birds` NeXML file using the `add_meta()` function. Because we do not specify a level, it is added to the root node, referring to the NeXML file as a whole.

    birds <- add_meta(modified, birds)

The built-in vocabularies are just the tip of the iceberg of established vocabularies. Here we add an annotation from the `skos` namespace which describes the history of where the data comes from:

    history <- meta(property = "skos:historyNote",
      content = "Mapped from the bird.orders data in the ape package using RNeXML")

Because `skos` is not in the current namespace list, we add it with a url when adding this meta element. We also specify that this annotation be placed at the level of the `trees` sub-node in the NeXML file.

    birds <- add_meta(history,
                    birds,
                    level = "trees",
                    namespaces = c(skos = "http://www.w3.org/2004/02/skos/core#"))

For finer control of the level at which a `meta` element is added, we will manipulate the `nexml` R object directly using S4 sub-setting, as shown in the supplement.

Much richer metadata annotation is possible. Later we illustrate how metadata annotation can be used to extend the base NeXML format to represent new forms of data while maintaining compatibility with any NeXML parser. The `RNeXML` package can be easily extended to support helper functions such as `taxize_nexml` to add additional metadata without imposing a large burden on the user.

## Reading NeXML metadata

A call to the `nexml` object prints some metadata summarizing the data structure:

    birds

    A nexml object representing:
         1 phylogenetic tree block(s), where:
           block 1 contains 1 phylogenetic tree(s)
         0 character block(s),
         23 taxonomic units in 1 block(s)
      Taxa:  Struthioniformes, Tinamiformes, Craciformes, Galliformes, Anseriformes, Turniciformes ...
      Metadata annotations:
        18 at top level
        0 in block 1 at otu level

    This data set describes the phylogenetic relationships of the
         orders of birds as reported by Sibley and Ahlquist (1990). Sibley
         and Ahlquist inferred this phylogeny from an extensive number of
         DNA/DNA hybridization experiments. The ``tapestry'' reported by
         these two authors (more than 1000 species out of the ca. 9000
         extant bird species) generated a lot of debates.

         The present tree is based on the relationships among orders. The
         branch lengths were calculated from the values of Delta T50H as
         found in Sibley and Ahlquist (1990, fig. 353).

    Author(s): Sibley, C. G. and Ahlquist, J. E., cboettig

    License: http://creativecommons.org/publicdomain/zero/1.0/

    NeXML generated by RNeXML using schema version: 0.9
    Size: 358.3 Kb

We can extract all metadata pertaining to the NeXML document as a whole (annotations of the XML root node, `<nexml>`) with the command

    meta <- get_metadata(birds)

This returns a data.frame of available metadata. We can see the kinds of metadata recorded from the names:

    meta

                            property   datatype
    1                       dc:title xsd:string
    2                     dc:creator xsd:string
    3                 dc:description xsd:string
    4                     cc:license       <NA>
    5  dcterms:bibliographicCitation xsd:string
    6                     dc:creator xsd:string
    7             dcterms:references       <NA>
    8         prism:modificationDate xsd:string
    9                   prism:volume xsd:string
    10                  dc:publisher xsd:string
    11         prism:publicationName xsd:string
    12              prism:endingPage xsd:string
    13            prism:startingPage xsd:string
    14         prism:publicationDate xsd:string
    15                      dc:title xsd:string
    16                dc:contributor xsd:string
    17                dc:contributor xsd:string
    18 dcterms:bibliographicCitation xsd:string
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 content
    1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          Phylogeny of the Orders of Birds From Sibley and Ahlquist
    2                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  Sibley, C. G. and Ahlquist, J. E.
    3  This data set describes the phylogenetic relationships of the\n     orders of birds as reported by Sibley and Ahlquist (1990). Sibley\n     and Ahlquist inferred this phylogeny from an extensive number of\n     DNA/DNA hybridization experiments. The ``tapestry'' reported by\n     these two authors (more than 1000 species out of the ca. 9000\n     extant bird species) generated a lot of debates.\n\n     The present tree is based on the relationships among orders. The\n     branch lengths were calculated from the values of Delta T50H as\n     found in Sibley and Ahlquist (1990, fig. 353).
    4                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               <NA>
    5                                                                                                                                                                                                                                                                                                                                                                                                                                                      Sibley, C. G. and Ahlquist, J. E. (1990) Phylogeny and\n     classification of birds: a study in molecular evolution. New\n     Haven: Yale University Press.
    6                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           cboettig
    7                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               <NA>
    8                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         2013-10-04
    9                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 35
    10                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Bioinformatics
    11                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    Bioinformatics
    12                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               528
    13                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               526
    14                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              2018
    15                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ape 5.0: an environment for modern phylogenetics and evolutionary analyses in {R}
    16                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        E. Paradis
    17                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        K. Schliep
    18                                                                                                                                                                                                                                                                                                                                                                                                                                                                 Paradis E, Schliep K (2018). "ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R."\n_Bioinformatics_, *35*, 526-528.
           xsi.type                                              href Meta meta
    1   LiteralMeta                                              <NA> m544 <NA>
    2   LiteralMeta                                              <NA> m545 <NA>
    3   LiteralMeta                                              <NA> m546 <NA>
    4  ResourceMeta http://creativecommons.org/publicdomain/zero/1.0/ m547 <NA>
    5   LiteralMeta                                              <NA> m548 <NA>
    6   LiteralMeta                                              <NA> m549 <NA>
    7  ResourceMeta                                              <NA> m560 <NA>
    8   LiteralMeta                                              <NA> m561 <NA>
    9   LiteralMeta                                              <NA> <NA> m560
    10  LiteralMeta                                              <NA> <NA> m560
    11  LiteralMeta                                              <NA> <NA> m560
    12  LiteralMeta                                              <NA> <NA> m560
    13  LiteralMeta                                              <NA> <NA> m560
    14  LiteralMeta                                              <NA> <NA> m560
    15  LiteralMeta                                              <NA> <NA> m560
    16  LiteralMeta                                              <NA> <NA> m560
    17  LiteralMeta                                              <NA> <NA> m560
    18  LiteralMeta                                              <NA> <NA> m560

We can also access a table of taxonomic metadata:

    get_taxa(birds)

         otu            label xsi.type otus
    1  ou362 Struthioniformes       NA  os8
    2  ou363     Tinamiformes       NA  os8
    3  ou364      Craciformes       NA  os8
    4  ou365      Galliformes       NA  os8
    5  ou366     Anseriformes       NA  os8
    6  ou367    Turniciformes       NA  os8
    7  ou368       Piciformes       NA  os8
    8  ou369    Galbuliformes       NA  os8
    9  ou370   Bucerotiformes       NA  os8
    10 ou371      Upupiformes       NA  os8
    11 ou372    Trogoniformes       NA  os8
    12 ou373    Coraciiformes       NA  os8
    13 ou374      Coliiformes       NA  os8
    14 ou375     Cuculiformes       NA  os8
    15 ou376   Psittaciformes       NA  os8
    16 ou377      Apodiformes       NA  os8
    17 ou378   Trochiliformes       NA  os8
    18 ou379  Musophagiformes       NA  os8
    19 ou380     Strigiformes       NA  os8
    20 ou381    Columbiformes       NA  os8
    21 ou382       Gruiformes       NA  os8
    22 ou383    Ciconiiformes       NA  os8
    23 ou384    Passeriformes       NA  os8

Which returns text from the otu element labels, typically used to define taxonomic names, rather than text from explicit meta elements.

We can also access metadata at a specific level (or use `level=all` to extract all meta elements in a list). Here we show only the first few results:

    otu_meta <- get_metadata(birds, level="otus/otu")
    otu_meta

    # A tibble: 0 x 3
    # … with 3 variables: otu <chr>, otus <chr>, Meta <chr>

## Merging metadata tables

We often want to combine metadata from multiple tables. For instance, in this exercise we want to include the taxonomic identifier and id value for each species returned in the character table. This helps us more precisely identify the species whose traits are described by the table.

    library("RNeXML")
    library("dplyr")
    library("geiger")

To begin, let’s generate a `NeXML` file using the tree and trait data from the `geiger` package’s “primates” data:

    data("primates")
    add_trees(primates$phy) %>%
      add_characters(primates$dat, ., append=TRUE) %>%
      taxize_nexml("itis") -> nex

(Note that we’ve used `dplyr`’s cute pipe syntax, but unfortunately our `add_` methods take the `nexml` object as the second argument instead of the first, so this isn’t as elegant since we need the stupid `.` to show where the piped output should go…)

We now read in the three tables of interest. Note that we tell `get_characters` to give us species labels as there own column, rather than as rownames. The latter is the default only because this plays more nicely with the default format for character matrices that is expected by `geiger` and other phylogenetics packages, but is in general a silly choice for data manipulation.

    otu_meta <- get_metadata(nex, "otus/otu")
    taxa <- get_taxa(nex)
    char <- get_characters(nex, rownames_as_col = TRUE)

We can take a peek at what the tables look like, just to orient ourselves:

    otu_meta

          property                                                                                  href     xsi.type   otu otus
    1   tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572992 ResourceMeta ou385  os9
    2   tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572857 ResourceMeta ou386  os9
    3   tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572935 ResourceMeta ou387  os9
    4   tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572936 ResourceMeta ou388  os9
    5   tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=945168 ResourceMeta ou389  os9
    6   tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=945164 ResourceMeta ou390  os9
    7   tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572939 ResourceMeta ou391  os9
    8   tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572940 ResourceMeta ou392  os9
    9   tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572941 ResourceMeta ou393  os9
    10  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572942 ResourceMeta ou394  os9
    11  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=944172 ResourceMeta ou395  os9
    12  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572944 ResourceMeta ou396  os9
    13  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572949 ResourceMeta ou397  os9
    14  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=945149 ResourceMeta ou398  os9
    15  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572949 ResourceMeta ou399  os9
    16  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572947 ResourceMeta ou400  os9
    17  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572945 ResourceMeta ou401  os9
    18  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572946 ResourceMeta ou402  os9
    19  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572951 ResourceMeta ou403  os9
    20  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572952 ResourceMeta ou404  os9
    21  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572887 ResourceMeta ou405  os9
    22  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572888 ResourceMeta ou406  os9
    23  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572954 ResourceMeta ou407  os9
    24  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572955 ResourceMeta ou408  os9
    25  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572957 ResourceMeta ou409  os9
    26  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572958 ResourceMeta ou410  os9
    27  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572956 ResourceMeta ou411  os9
    28  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572953 ResourceMeta ou412  os9
    29  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572881 ResourceMeta ou413  os9
    30  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572959 ResourceMeta ou414  os9
    31  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572983 ResourceMeta ou415  os9
    32  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572984 ResourceMeta ou416  os9
    33  tc:toTaxon http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=1025131 ResourceMeta ou417  os9
    34  tc:toTaxon http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=1025134 ResourceMeta ou418  os9
    35  tc:toTaxon http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=1025122 ResourceMeta ou419  os9
    36  tc:toTaxon http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=1025127 ResourceMeta ou420  os9
    37  tc:toTaxon http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=1025112 ResourceMeta ou421  os9
    38  tc:toTaxon http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=1025134 ResourceMeta ou422  os9
    39  tc:toTaxon http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=1025125 ResourceMeta ou423  os9
    40  tc:toTaxon http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=1025116 ResourceMeta ou424  os9
    41  tc:toTaxon http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=1025119 ResourceMeta ou425  os9
    42  tc:toTaxon http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=1025114 ResourceMeta ou426  os9
    43  tc:toTaxon http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=1025115 ResourceMeta ou427  os9
    44  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572962 ResourceMeta ou428  os9
    45  tc:toTaxon http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=1025106 ResourceMeta ou429  os9
    46  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572909 ResourceMeta ou430  os9
    47  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=944125 ResourceMeta ou431  os9
    48  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572911 ResourceMeta ou432  os9
    49  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572912 ResourceMeta ou433  os9
    50  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572913 ResourceMeta ou434  os9
    51  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=944138 ResourceMeta ou435  os9
    52  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572915 ResourceMeta ou436  os9
    53  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572916 ResourceMeta ou437  os9
    54  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572918 ResourceMeta ou438  os9
    55  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=944123 ResourceMeta ou439  os9
    56  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572975 ResourceMeta ou440  os9
    57  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=944156 ResourceMeta ou441  os9
    58  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572977 ResourceMeta ou442  os9
    59  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572978 ResourceMeta ou443  os9
    60  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572993 ResourceMeta ou444  os9
    61  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572994 ResourceMeta ou445  os9
    62  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572995 ResourceMeta ou446  os9
    63  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572996 ResourceMeta ou447  os9
    64  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572997 ResourceMeta ou448  os9
    65  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572998 ResourceMeta ou449  os9
    66  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572999 ResourceMeta ou450  os9
    67  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573000 ResourceMeta ou451  os9
    68  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573001 ResourceMeta ou452  os9
    69  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573002 ResourceMeta ou453  os9
    70  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573003 ResourceMeta ou454  os9
    71  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=944219 ResourceMeta ou455  os9
    72  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573005 ResourceMeta ou456  os9
    73  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573006 ResourceMeta ou457  os9
    74  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573007 ResourceMeta ou458  os9
    75  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573008 ResourceMeta ou459  os9
    76  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573009 ResourceMeta ou460  os9
    77  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573010 ResourceMeta ou461  os9
    78  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=945227 ResourceMeta ou462  os9
    79  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573014 ResourceMeta ou463  os9
    80  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=944221 ResourceMeta ou464  os9
    81  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573011 ResourceMeta ou465  os9
    82  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572858 ResourceMeta ou466  os9
    83  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572859 ResourceMeta ou467  os9
    84  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572985 ResourceMeta ou468  os9
    85  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572986 ResourceMeta ou469  os9
    86  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=552515 ResourceMeta ou470  os9
    87  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573035 ResourceMeta ou471  os9
    88  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573036 ResourceMeta ou472  os9
    89  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573037 ResourceMeta ou473  os9
    90  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573038 ResourceMeta ou474  os9
    91  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572886 ResourceMeta ou475  os9
    92  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573015 ResourceMeta ou476  os9
    93  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572865 ResourceMeta ou477  os9
    94  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572864 ResourceMeta ou478  os9
    95  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572866 ResourceMeta ou479  os9
    96  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572867 ResourceMeta ou480  os9
    97  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572868 ResourceMeta ou481  os9
    98  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572893 ResourceMeta ou482  os9
    99  tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572894 ResourceMeta ou483  os9
    100 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=944100 ResourceMeta ou484  os9
    101 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572896 ResourceMeta ou485  os9
    102 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572897 ResourceMeta ou486  os9
    103 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572898 ResourceMeta ou487  os9
    104 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572899 ResourceMeta ou488  os9
    105 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572900 ResourceMeta ou489  os9
    106 tc:toTaxon http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=1025177 ResourceMeta ou490  os9
    107 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573080 ResourceMeta ou491  os9
    108 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572869 ResourceMeta ou492  os9
    109 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572870 ResourceMeta ou493  os9
    110 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=944072 ResourceMeta ou494  os9
    111 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=180092 ResourceMeta ou495  os9
    112 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573069 ResourceMeta ou496  os9
    113 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=944286 ResourceMeta ou497  os9
    114 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=944292 ResourceMeta ou498  os9
    115 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=945338 ResourceMeta ou499  os9
    116 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573073 ResourceMeta ou500  os9
    117 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573074 ResourceMeta ou501  os9
    118 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=944290 ResourceMeta ou502  os9
    119 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573076 ResourceMeta ou503  os9
    120 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573077 ResourceMeta ou504  os9
    121 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573078 ResourceMeta ou505  os9
    122 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=944293 ResourceMeta ou506  os9
    123 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572882 ResourceMeta ou507  os9
    124 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572961 ResourceMeta ou508  os9
    125 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=944187 ResourceMeta ou509  os9
    126 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572872 ResourceMeta ou510  os9
    127 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572921 ResourceMeta ou511  os9
    128 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572920 ResourceMeta ou513  os9
    129 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572922 ResourceMeta ou514  os9
    130 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572874 ResourceMeta ou515  os9
    131 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572875 ResourceMeta ou516  os9
    132 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572876 ResourceMeta ou517  os9
    133 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572877 ResourceMeta ou518  os9
    134 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572878 ResourceMeta ou519  os9
    135 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572879 ResourceMeta ou520  os9
    136 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572880 ResourceMeta ou521  os9
    137 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573016 ResourceMeta ou522  os9
    138 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572889 ResourceMeta ou523  os9
    139 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573017 ResourceMeta ou524  os9
    140 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573018 ResourceMeta ou525  os9
    141 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573019 ResourceMeta ou526  os9
    142 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=180098 ResourceMeta ou527  os9
    143 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=555659 ResourceMeta ou528  os9
    144 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573020 ResourceMeta ou529  os9
    145 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=180099 ResourceMeta ou530  os9
    146 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573021 ResourceMeta ou531  os9
    147 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573022 ResourceMeta ou532  os9
    148 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573023 ResourceMeta ou533  os9
    149 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573024 ResourceMeta ou534  os9
    150 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573025 ResourceMeta ou535  os9
    151 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573026 ResourceMeta ou536  os9
    152 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573027 ResourceMeta ou537  os9
    153 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573028 ResourceMeta ou538  os9
    154 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573029 ResourceMeta ou539  os9
    155 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573030 ResourceMeta ou540  os9
    156 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573031 ResourceMeta ou541  os9
    157 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=944041 ResourceMeta ou542  os9
    158 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572861 ResourceMeta ou543  os9
    159 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572862 ResourceMeta ou544  os9
    160 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573032 ResourceMeta ou545  os9
    161 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=944263 ResourceMeta ou546  os9
    162 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573040 ResourceMeta ou547  os9
    163 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572890 ResourceMeta ou548  os9
    164 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572891 ResourceMeta ou549  os9
    165 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572902 ResourceMeta ou550  os9
    166 tc:toTaxon  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572903 ResourceMeta ou551  os9
        Meta
    1   m563
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     [ reached 'max' / getOption("max.print") -- omitted 66 rows ]

    taxa

          otu                        label xsi.type otus
    1   ou385  Allenopithecus_nigroviridis       NA  os9
    2   ou386          Allocebus_trichotis       NA  os9
    3   ou387            Alouatta_belzebul       NA  os9
    4   ou388              Alouatta_caraya       NA  os9
    5   ou389           Alouatta_coibensis       NA  os9
    6   ou390               Alouatta_fusca       NA  os9
    7   ou391            Alouatta_palliata       NA  os9
    8   ou392               Alouatta_pigra       NA  os9
    9   ou393                Alouatta_sara       NA  os9
    10  ou394           Alouatta_seniculus       NA  os9
    11  ou395                 Aotus_azarai       NA  os9
    12  ou396              Aotus_brumbacki       NA  os9
    13  ou397           Aotus_hershkovitzi       NA  os9
    14  ou398              Aotus_infulatus       NA  os9
    15  ou399              Aotus_lemurinus       NA  os9
    16  ou400                Aotus_miconax       NA  os9
    17  ou401              Aotus_nancymaae       NA  os9
    18  ou402              Aotus_nigriceps       NA  os9
    19  ou403            Aotus_trivirgatus       NA  os9
    20  ou404             Aotus_vociferans       NA  os9
    21  ou405            Arctocebus_aureus       NA  os9
    22  ou406      Arctocebus_calabarensis       NA  os9
    23  ou407             Ateles_belzebuth       NA  os9
    24  ou408                Ateles_chamek       NA  os9
    25  ou409             Ateles_fusciceps       NA  os9
    26  ou410             Ateles_geoffroyi       NA  os9
    27  ou411            Ateles_marginatus       NA  os9
    28  ou412              Ateles_paniscus       NA  os9
    29  ou413                Avahi_laniger       NA  os9
    30  ou414      Brachyteles_arachnoides       NA  os9
    31  ou415               Cacajao_calvus       NA  os9
    32  ou416       Cacajao_melanocephalus       NA  os9
    33  ou417          Callicebus_brunneus       NA  os9
    34  ou418         Callicebus_caligatus       NA  os9
    35  ou419       Callicebus_cinerascens       NA  os9
    36  ou420           Callicebus_cupreus       NA  os9
    37  ou421      Callicebus_donacophilus       NA  os9
    38  ou422            Callicebus_dubius       NA  os9
    39  ou423        Callicebus_hoffmannsi       NA  os9
    40  ou424          Callicebus_modestus       NA  os9
    41  ou425            Callicebus_moloch       NA  os9
    42  ou426          Callicebus_oenanthe       NA  os9
    43  ou427           Callicebus_olallae       NA  os9
    44  ou428        Callicebus_personatus       NA  os9
    45  ou429         Callicebus_torquatus       NA  os9
    46  ou430            Callimico_goeldii       NA  os9
    47  ou431         Callithrix_argentata       NA  os9
    48  ou432            Callithrix_aurita       NA  os9
    49  ou433         Callithrix_flaviceps       NA  os9
    50  ou434         Callithrix_geoffroyi       NA  os9
    51  ou435      Callithrix_humeralifera       NA  os9
    52  ou436           Callithrix_jacchus       NA  os9
    53  ou437            Callithrix_kuhlii       NA  os9
    54  ou438       Callithrix_penicillata       NA  os9
    55  ou439           Callithrix_pygmaea       NA  os9
    56  ou440              Cebus_albifrons       NA  os9
    57  ou441                 Cebus_apella       NA  os9
    58  ou442              Cebus_capucinus       NA  os9
    59  ou443              Cebus_olivaceus       NA  os9
    60  ou444            Cercocebus_agilis       NA  os9
    61  ou445         Cercocebus_galeritus       NA  os9
    62  ou446         Cercocebus_torquatus       NA  os9
    63  ou447       Cercopithecus_ascanius       NA  os9
    64  ou448      Cercopithecus_campbelli       NA  os9
    65  ou449         Cercopithecus_cephus       NA  os9
    66  ou450          Cercopithecus_diana       NA  os9
    67  ou451          Cercopithecus_dryas       NA  os9
    68  ou452  Cercopithecus_erythrogaster       NA  os9
    69  ou453     Cercopithecus_erythrotis       NA  os9
    70  ou454        Cercopithecus_hamlyni       NA  os9
    71  ou455        Cercopithecus_lhoesti       NA  os9
    72  ou456          Cercopithecus_mitis       NA  os9
    73  ou457           Cercopithecus_mona       NA  os9
    74  ou458      Cercopithecus_neglectus       NA  os9
    75  ou459      Cercopithecus_nictitans       NA  os9
    76  ou460     Cercopithecus_petaurista       NA  os9
    77  ou461       Cercopithecus_pogonias       NA  os9
    78  ou462        Cercopithecus_preussi       NA  os9
    79  ou463       Cercopithecus_sclateri       NA  os9
    80  ou464        Cercopithecus_solatus       NA  os9
    81  ou465          Cercopithecus_wolfi       NA  os9
    82  ou466           Cheirogaleus_major       NA  os9
    83  ou467          Cheirogaleus_medius       NA  os9
    84  ou468         Chiropotes_albinasus       NA  os9
    85  ou469           Chiropotes_satanas       NA  os9
    86  ou470         Chlorocebus_aethiops       NA  os9
    87  ou471           Colobus_angolensis       NA  os9
    88  ou472              Colobus_guereza       NA  os9
    89  ou473            Colobus_polykomos       NA  os9
    90  ou474              Colobus_satanas       NA  os9
    91  ou475 Daubentonia_madagascariensis       NA  os9
    92  ou476           Erythrocebus_patas       NA  os9
    93  ou477            Eulemur_coronatus       NA  os9
    94  ou478               Eulemur_fulvus       NA  os9
    95  ou479               Eulemur_macaco       NA  os9
    96  ou480               Eulemur_mongoz       NA  os9
    97  ou481          Eulemur_rubriventer       NA  os9
    98  ou482         Euoticus_elegantulus       NA  os9
    99  ou483            Euoticus_pallidus       NA  os9
    100 ou484                Galago_alleni       NA  os9
    101 ou485              Galago_gallarum       NA  os9
    102 ou486             Galago_matschiei       NA  os9
    103 ou487                Galago_moholi       NA  os9
    104 ou488          Galago_senegalensis       NA  os9
    105 ou489          Galagoides_demidoff       NA  os9
    106 ou490      Galagoides_zanzibaricus       NA  os9
    107 ou491              Gorilla_gorilla       NA  os9
    108 ou492             Hapalemur_aureus       NA  os9
    109 ou493            Hapalemur_griseus       NA  os9
    110 ou494              Hapalemur_simus       NA  os9
    111 ou495                 Homo_sapiens       NA  os9
    112 ou496             Hylobates_agilis       NA  os9
    113 ou497           Hylobates_concolor       NA  os9
    114 ou498         Hylobates_gabriellae       NA  os9
    115 ou499            Hylobates_hoolock       NA  os9
    116 ou500            Hylobates_klossii       NA  os9
    117 ou501                Hylobates_lar       NA  os9
    118 ou502         Hylobates_leucogenys       NA  os9
    119 ou503             Hylobates_moloch       NA  os9
    120 ou504           Hylobates_muelleri       NA  os9
    121 ou505           Hylobates_pileatus       NA  os9
    122 ou506        Hylobates_syndactylus       NA  os9
    123 ou507                  Indri_indri       NA  os9
    124 ou508         Lagothrix_flavicauda       NA  os9
    125 ou509         Lagothrix_lagotricha       NA  os9
    126 ou510                  Lemur_catta       NA  os9
    127 ou511      Leontopithecus_caissara       NA  os9
    128 ou512    Leontopithecus_chrysomela       NA  os9
    129 ou513   Leontopithecus_chrysopygus       NA  os9
    130 ou514       Leontopithecus_rosalia       NA  os9
    131 ou515           Lepilemur_dorsalis       NA  os9
    132 ou516           Lepilemur_edwardsi       NA  os9
    133 ou517           Lepilemur_leucopus       NA  os9
    134 ou518           Lepilemur_microdon       NA  os9
    135 ou519         Lepilemur_mustelinus       NA  os9
    136 ou520       Lepilemur_ruficaudatus       NA  os9
    137 ou521    Lepilemur_septentrionalis       NA  os9
    138 ou522          Lophocebus_albigena       NA  os9
    139 ou523            Loris_tardigradus       NA  os9
    140 ou524             Macaca_arctoides       NA  os9
    141 ou525            Macaca_assamensis       NA  os9
    142 ou526              Macaca_cyclopis       NA  os9
    143 ou527          Macaca_fascicularis       NA  os9
    144 ou528               Macaca_fuscata       NA  os9
    145 ou529                 Macaca_maura       NA  os9
    146 ou530               Macaca_mulatta       NA  os9
    147 ou531            Macaca_nemestrina       NA  os9
    148 ou532                 Macaca_nigra       NA  os9
    149 ou533              Macaca_ochreata       NA  os9
    150 ou534               Macaca_radiata       NA  os9
    151 ou535               Macaca_silenus       NA  os9
    152 ou536                Macaca_sinica       NA  os9
    153 ou537              Macaca_sylvanus       NA  os9
    154 ou538             Macaca_thibetana       NA  os9
    155 ou539              Macaca_tonkeana       NA  os9
    156 ou540       Mandrillus_leucophaeus       NA  os9
    157 ou541            Mandrillus_sphinx       NA  os9
    158 ou542         Microcebus_coquereli       NA  os9
    159 ou543           Microcebus_murinus       NA  os9
    160 ou544             Microcebus_rufus       NA  os9
    161 ou545         Miopithecus_talapoin       NA  os9
    162 ou546             Nasalis_concolor       NA  os9
    163 ou547             Nasalis_larvatus       NA  os9
    164 ou548           Nycticebus_coucang       NA  os9
    165 ou549          Nycticebus_pygmaeus       NA  os9
    166 ou550      Otolemur_crassicaudatus       NA  os9
    167 ou551           Otolemur_garnettii       NA  os9
    168 ou552                 Pan_paniscus       NA  os9
    169 ou553              Pan_troglodytes       NA  os9
    170 ou554              Papio_hamadryas       NA  os9
    171 ou555           Perodicticus_potto       NA  os9
    172 ou556              Phaner_furcifer       NA  os9
    173 ou557       Pithecia_aequatorialis       NA  os9
    174 ou558            Pithecia_albicans       NA  os9
    175 ou559            Pithecia_irrorata       NA  os9
    176 ou560            Pithecia_monachus       NA  os9
    177 ou561            Pithecia_pithecia       NA  os9
    178 ou562               Pongo_pygmaeus       NA  os9
    179 ou563             Presbytis_comata       NA  os9
    180 ou564          Presbytis_femoralis       NA  os9
    181 ou565           Presbytis_frontata       NA  os9
    182 ou566              Presbytis_hosei       NA  os9
    183 ou567         Presbytis_melalophos       NA  os9
    184 ou568         Presbytis_potenziani       NA  os9
    185 ou569          Presbytis_rubicunda       NA  os9
    186 ou570            Presbytis_thomasi       NA  os9
    187 ou571            Procolobus_badius       NA  os9
    188 ou572         Procolobus_pennantii       NA  os9
    189 ou573           Procolobus_preussi       NA  os9
    190 ou574      Procolobus_rufomitratus       NA  os9
    191 ou575             Procolobus_verus       NA  os9
    192 ou576          Propithecus_diadema       NA  os9
    193 ou577      Propithecus_tattersalli       NA  os9
    194 ou578        Propithecus_verreauxi       NA  os9
    195 ou579          Pygathrix_avunculus       NA  os9
    196 ou580              Pygathrix_bieti       NA  os9
    197 ou581           Pygathrix_brelichi       NA  os9
    198 ou582            Pygathrix_nemaeus       NA  os9
    199 ou583          Pygathrix_roxellana       NA  os9
    200 ou584             Saguinus_bicolor       NA  os9
    201 ou585         Saguinus_fuscicollis       NA  os9
    202 ou586           Saguinus_geoffroyi       NA  os9
    203 ou587           Saguinus_imperator       NA  os9
    204 ou588             Saguinus_inustus       NA  os9
    205 ou589            Saguinus_labiatus       NA  os9
    206 ou590            Saguinus_leucopus       NA  os9
    207 ou591               Saguinus_midas       NA  os9
    208 ou592              Saguinus_mystax       NA  os9
    209 ou593         Saguinus_nigricollis       NA  os9
    210 ou594             Saguinus_oedipus       NA  os9
    211 ou595         Saguinus_tripartitus       NA  os9
    212 ou596          Saimiri_boliviensis       NA  os9
    213 ou597            Saimiri_oerstedii       NA  os9
    214 ou598             Saimiri_sciureus       NA  os9
    215 ou599                Saimiri_ustus       NA  os9
    216 ou600           Saimiri_vanzolinii       NA  os9
    217 ou601       Semnopithecus_entellus       NA  os9
    218 ou602             Tarsius_bancanus       NA  os9
    219 ou603               Tarsius_dianae       NA  os9
    220 ou604              Tarsius_pumilus       NA  os9
    221 ou605             Tarsius_spectrum       NA  os9
    222 ou606             Tarsius_syrichta       NA  os9
    223 ou607         Theropithecus_gelada       NA  os9
    224 ou608       Trachypithecus_auratus       NA  os9
    225 ou609     Trachypithecus_cristatus       NA  os9
    226 ou610     Trachypithecus_francoisi       NA  os9
    227 ou611          Trachypithecus_geei       NA  os9
    228 ou612        Trachypithecus_johnii       NA  os9
    229 ou613      Trachypithecus_obscurus       NA  os9
    230 ou614       Trachypithecus_phayrei       NA  os9
    231 ou615      Trachypithecus_pileatus       NA  os9
    232 ou616       Trachypithecus_vetulus       NA  os9
    233 ou617            Varecia_variegata       NA  os9

    head(char)

                             taxa        x
    1 Allenopithecus_nigroviridis 8.465900
    2         Allocebus_trichotis 4.368181
    3           Alouatta_belzebul 8.729074
    4             Alouatta_caraya 8.628735
    5          Alouatta_coibensis 8.764053
    6              Alouatta_fusca 8.554489

Now that we have nice `data.frame` objects for all our data, it’s easy to join them into the desired table with a few obvious `dplyr` commands:

    taxa %>%
      left_join(char, by = c("label" = "taxa")) %>%
      left_join(otu_meta, by = "otu") %>%
      select(otu, label, x, href)

          otu                        label         x
    1   ou385  Allenopithecus_nigroviridis  8.465900
    2   ou386          Allocebus_trichotis  4.368181
    3   ou387            Alouatta_belzebul  8.729074
    4   ou388              Alouatta_caraya  8.628735
    5   ou389           Alouatta_coibensis  8.764053
    6   ou390               Alouatta_fusca  8.554489
    7   ou391            Alouatta_palliata  8.791790
    8   ou392               Alouatta_pigra  8.881836
    9   ou393                Alouatta_sara  8.796339
    10  ou394           Alouatta_seniculus  8.767173
    11  ou395                 Aotus_azarai  7.127694
    12  ou396              Aotus_brumbacki  6.401917
    13  ou397           Aotus_hershkovitzi  6.684612
    14  ou398              Aotus_infulatus  7.122867
    15  ou399              Aotus_lemurinus  6.781058
    16  ou400                Aotus_miconax  6.684612
    17  ou401              Aotus_nancymaae  6.678342
    18  ou402              Aotus_nigriceps  6.966024
    19  ou403            Aotus_trivirgatus  6.815640
    20  ou404             Aotus_vociferans  6.771936
    21  ou405            Arctocebus_aureus  5.459586
    22  ou406      Arctocebus_calabarensis  5.552960
    23  ou407             Ateles_belzebuth  8.812843
    24  ou408                Ateles_chamek  8.872067
    25  ou409             Ateles_fusciceps  9.112728
    26  ou410             Ateles_geoffroyi  8.937218
    27  ou411            Ateles_marginatus  8.738735
    28  ou412              Ateles_paniscus  9.072227
    29  ou413                Avahi_laniger  6.927558
    30  ou414      Brachyteles_arachnoides  9.268609
    31  ou415               Cacajao_calvus  8.137396
    32  ou416       Cacajao_melanocephalus  8.051978
    33  ou417          Callicebus_brunneus  6.747587
    34  ou418         Callicebus_caligatus  6.899723
    35  ou419       Callicebus_cinerascens  6.899723
    36  ou420           Callicebus_cupreus  7.021084
    37  ou421      Callicebus_donacophilus  6.801283
    38  ou422            Callicebus_dubius  6.899723
    39  ou423        Callicebus_hoffmannsi  6.975414
    40  ou424          Callicebus_modestus  6.899723
    41  ou425            Callicebus_moloch  6.872128
    42  ou426          Callicebus_oenanthe  6.899723
    43  ou427           Callicebus_olallae  6.899723
    44  ou428        Callicebus_personatus  7.237059
    45  ou429         Callicebus_torquatus  7.106606
    46  ou430            Callimico_goeldii  6.324359
    47  ou431         Callithrix_argentata  5.910797
    48  ou432            Callithrix_aurita  5.961005
    49  ou433         Callithrix_flaviceps  5.926926
    50  ou434         Callithrix_geoffroyi  5.834811
    51  ou435      Callithrix_humeralifera  5.926926
    52  ou436           Callithrix_jacchus  5.673323
    53  ou437            Callithrix_kuhlii  5.926926
    54  ou438       Callithrix_penicillata  5.828946
    55  ou439           Callithrix_pygmaea  4.828314
    56  ou440              Cebus_albifrons  7.832014
    57  ou441                 Cebus_apella  7.922986
    58  ou442              Cebus_capucinus  8.009695
    59  ou443              Cebus_olivaceus  7.937375
    60  ou444            Cercocebus_agilis  8.870663
    61  ou445         Cercocebus_galeritus  8.865029
    62  ou446         Cercocebus_torquatus  8.894259
    63  ou447       Cercopithecus_ascanius  8.171882
    64  ou448      Cercopithecus_campbelli  8.199739
    65  ou449         Cercopithecus_cephus  8.143227
    66  ou450          Cercopithecus_diana  8.382518
    67  ou451          Cercopithecus_dryas  7.930206
    68  ou452  Cercopithecus_erythrogaster  8.143227
    69  ou453     Cercopithecus_erythrotis  8.086410
    70  ou454        Cercopithecus_hamlyni  8.438150
    71  ou455        Cercopithecus_lhoesti  8.579229
    72  ou456          Cercopithecus_mitis  8.525161
    73  ou457           Cercopithecus_mona  8.289037
    74  ou458      Cercopithecus_neglectus  8.579229
    75  ou459      Cercopithecus_nictitans  8.567886
    76  ou460     Cercopithecus_petaurista  8.083329
    77  ou461       Cercopithecus_pogonias  8.183118
    78  ou462        Cercopithecus_preussi  8.544808
    79  ou463       Cercopithecus_sclateri  8.029433
    80  ou464        Cercopithecus_solatus  8.567886
    81  ou465          Cercopithecus_wolfi  8.089482
    82  ou466           Cheirogaleus_major  6.104793
    83  ou467          Cheirogaleus_medius  5.283204
    84  ou468         Chiropotes_albinasus  7.937375
    85  ou469           Chiropotes_satanas  7.996317
    86  ou470         Chlorocebus_aethiops  8.301522
    87  ou471           Colobus_angolensis  9.103868
    88  ou472              Colobus_guereza  9.210340
    89  ou473            Colobus_polykomos  9.060680
    90  ou474              Colobus_satanas  9.121509
    91  ou475 Daubentonia_madagascariensis  7.919356
    92  ou476           Erythrocebus_patas  8.988446
    93  ou477            Eulemur_coronatus  7.438384
    94  ou478               Eulemur_fulvus  7.779049
    95  ou479               Eulemur_macaco  7.816014
    96  ou480               Eulemur_mongoz  7.478735
    97  ou481          Eulemur_rubriventer  7.620705
    98  ou482         Euoticus_elegantulus  5.690359
    99  ou483            Euoticus_pallidus  5.627621
    100 ou484                Galago_alleni  5.521461
    101 ou485              Galago_gallarum  5.365976
    102 ou486             Galago_matschiei  5.267858
    103 ou487                Galago_moholi  5.375278
    104 ou488          Galago_senegalensis  5.594711
    105 ou489          Galagoides_demidoff  4.206184
    106 ou490      Galagoides_zanzibaricus  4.997212
    107 ou491              Gorilla_gorilla 11.643954
    108 ou492             Hapalemur_aureus  7.358831
    109 ou493            Hapalemur_griseus  6.862758
    110 ou494              Hapalemur_simus  7.620705
    111 ou495                 Homo_sapiens 10.980195
    112 ou496             Hylobates_agilis  8.675905
    113 ou497           Hylobates_concolor  8.768730
    114 ou498         Hylobates_gabriellae  9.047821
    115 ou499            Hylobates_hoolock  8.809863
    116 ou500            Hylobates_klossii  8.674197
    117 ou501                Hylobates_lar  8.635865
    118 ou502         Hylobates_leucogenys  8.898366
    119 ou503             Hylobates_moloch  8.677610
    120 ou504           Hylobates_muelleri  8.687779
    121 ou505           Hylobates_pileatus  8.630522
    122 ou506        Hylobates_syndactylus  9.296518
    123 ou507                  Indri_indri  9.065315
    124 ou508         Lagothrix_flavicauda  9.020390
    125 ou509         Lagothrix_lagotricha  8.743532
    126 ou510                  Lemur_catta  7.878534
    127 ou511      Leontopithecus_caissara  6.405228
    128 ou512    Leontopithecus_chrysomela  6.352629
    129 ou513   Leontopithecus_chrysopygus  6.486161
    130 ou514       Leontopithecus_rosalia  6.385194
    131 ou515           Lepilemur_dorsalis  6.232448
    132 ou516           Lepilemur_edwardsi  6.711740
    133 ou517           Lepilemur_leucopus  6.396930
    134 ou518           Lepilemur_microdon  6.863803
    135 ou519         Lepilemur_mustelinus  6.508769
    136 ou520       Lepilemur_ruficaudatus  6.637258
    137 ou521    Lepilemur_septentrionalis  6.638568
    138 ou522          Lophocebus_albigena  8.903815
    139 ou523            Loris_tardigradus  5.517453
    140 ou524             Macaca_arctoides  9.148465
    141 ou525            Macaca_assamensis  9.054855
    142 ou526              Macaca_cyclopis  8.658693
    143 ou527          Macaca_fascicularis  8.431635
    144 ou528               Macaca_fuscata  9.220291
    145 ou529                 Macaca_maura  8.894259
    146 ou530               Macaca_mulatta  8.771835
    147 ou531            Macaca_nemestrina  8.970813
    148 ou532                 Macaca_nigra  8.906529
    149 ou533              Macaca_ochreata  7.919356
    150 ou534               Macaca_radiata  8.517193
    151 ou535               Macaca_silenus  8.699515
    152 ou536                Macaca_sinica  8.446771
    153 ou537              Macaca_sylvanus  9.350102
    154 ou538             Macaca_thibetana  9.268609
    155 ou539              Macaca_tonkeana  9.220291
    156 ou540       Mandrillus_leucophaeus  9.560997
    157 ou541            Mandrillus_sphinx  9.729134
    158 ou542         Microcebus_coquereli  5.793014
    159 ou543           Microcebus_murinus  4.198705
    160 ou544             Microcebus_rufus  3.881564
    161 ou545         Miopithecus_talapoin  7.130899
    162 ou546             Nasalis_concolor  8.979354
    163 ou547             Nasalis_larvatus  9.417355
    164 ou548           Nycticebus_coucang  6.878326
    165 ou549          Nycticebus_pygmaeus  5.840642
    166 ou550      Otolemur_crassicaudatus  7.130899
    167 ou551           Otolemur_garnettii  6.701960
    168 ou552                 Pan_paniscus 10.468801
    169 ou553              Pan_troglodytes 10.716638
    170 ou554              Papio_hamadryas  9.735069
    171 ou555           Perodicticus_potto  6.984716
    172 ou556              Phaner_furcifer  6.016157
    173 ou557       Pithecia_aequatorialis  7.774856
    174 ou558            Pithecia_albicans  7.937375
    175 ou559            Pithecia_irrorata  7.749322
    176 ou560            Pithecia_monachus  7.654443
    177 ou561            Pithecia_pithecia  7.420579
    178 ou562               Pongo_pygmaeus 10.860920
    179 ou563             Presbytis_comata  9.039552
    180 ou564          Presbytis_femoralis  8.797851
    181 ou565           Presbytis_frontata  8.853665
    182 ou566              Presbytis_hosei  8.725832
    183 ou567         Presbytis_melalophos  8.748305
    184 ou568         Presbytis_potenziani  8.774931
    185 ou569          Presbytis_rubicunda  8.773385
    186 ou570            Presbytis_thomasi  8.765615
    187 ou571            Procolobus_badius  8.808369
    188 ou572         Procolobus_pennantii  9.122601
    189 ou573           Procolobus_preussi  9.094930
    190 ou574      Procolobus_rufomitratus  8.995909
    191 ou575             Procolobus_verus  8.289037
    192 ou576          Propithecus_diadema  8.794825
    193 ou577      Propithecus_tattersalli  8.171882
    194 ou578        Propithecus_verreauxi  8.202482
    195 ou579          Pygathrix_avunculus  9.164296
    196 ou580              Pygathrix_bieti  9.118225
    197 ou581           Pygathrix_brelichi  9.305651
    198 ou582            Pygathrix_nemaeus  9.417355
    199 ou583          Pygathrix_roxellana  9.510445
    200 ou584             Saguinus_bicolor  6.142037
    201 ou585         Saguinus_fuscicollis  5.976351
    202 ou586           Saguinus_geoffroyi  6.200509
    203 ou587           Saguinus_imperator  6.016157
    204 ou588             Saguinus_inustus  6.688355
    205 ou589            Saguinus_labiatus  6.234411
    206 ou590            Saguinus_leucopus  6.124683
    207 ou591               Saguinus_midas  6.293419
    208 ou592              Saguinus_mystax  6.326149
    209 ou593         Saguinus_nigricollis  6.109248
    210 ou594             Saguinus_oedipus  6.139885
    211 ou595         Saguinus_tripartitus  5.953243
    212 ou596          Saimiri_boliviensis  6.690842
    213 ou597            Saimiri_oerstedii  6.570883
    214 ou598             Saimiri_sciureus  6.620073
    215 ou599                Saimiri_ustus  6.791221
    216 ou600           Saimiri_vanzolinii  6.664409
    217 ou601       Semnopithecus_entellus  9.441452
    218 ou602             Tarsius_bancanus  4.736198
    219 ou603               Tarsius_dianae  4.709530
    220 ou604              Tarsius_pumilus  4.808111
    221 ou605             Tarsius_spectrum  5.111988
    222 ou606             Tarsius_syrichta  4.753590
    223 ou607         Theropithecus_gelada  9.680344
    224 ou608       Trachypithecus_auratus  9.181941
    225 ou609     Trachypithecus_cristatus  8.872067
    226 ou610     Trachypithecus_francoisi  9.008224
    227 ou611          Trachypithecus_geei  9.031214
    228 ou612        Trachypithecus_johnii  9.268609
    229 ou613      Trachypithecus_obscurus  8.870663
    230 ou614       Trachypithecus_phayrei  8.948976
    231 ou615      Trachypithecus_pileatus  9.323669
    232 ou616       Trachypithecus_vetulus  8.969542
    233 ou617            Varecia_variegata  8.261010
                                                                                         href
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    35  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=1025122
    36  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=1025127
    37  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=1025112
    38  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=1025134
    39  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=1025125
    40  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=1025116
    41  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=1025119
    42  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=1025114
    43  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=1025115
    44   http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572962
    45  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=1025106
    46   http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572909
    47   http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=944125
    48   http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572911
    49   http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572912
    50   http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572913
    51   http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=944138
    52   http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572915
    53   http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572916
    54   http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572918
    55   http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=944123
    56   http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572975
    57   http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=944156
    58   http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572977
    59   http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572978
    60   http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572993
    61   http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572994
    62   http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572995
    63   http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572996
    64   http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572997
    65   http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572998
    66   http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572999
    67   http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573000
    68   http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573001
    69   http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573002
    70   http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573003
    71   http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=944219
    72   http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573005
    73   http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573006
    74   http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573007
    75   http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573008
    76   http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573009
    77   http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573010
    78   http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=945227
    79   http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573014
    80   http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=944221
    81   http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573011
    82   http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572858
    83   http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572859
    84   http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572985
    85   http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572986
    86   http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=552515
    87   http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573035
    88   http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573036
    89   http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573037
    90   http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573038
    91   http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572886
    92   http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573015
    93   http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572865
    94   http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572864
    95   http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572866
    96   http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572867
    97   http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572868
    98   http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572893
    99   http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572894
    100  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=944100
    101  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572896
    102  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572897
    103  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572898
    104  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572899
    105  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572900
    106 http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=1025177
    107  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573080
    108  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572869
    109  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572870
    110  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=944072
    111  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=180092
    112  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573069
    113  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=944286
    114  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=944292
    115  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=945338
    116  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573073
    117  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573074
    118  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=944290
    119  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573076
    120  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573077
    121  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573078
    122  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=944293
    123  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572882
    124  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572961
    125  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=944187
    126  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572872
    127  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572921
    128                                                                                  <NA>
    129  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572920
    130  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572922
    131  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572874
    132  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572875
    133  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572876
    134  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572877
    135  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572878
    136  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572879
    137  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572880
    138  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573016
    139  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572889
    140  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573017
    141  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573018
    142  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573019
    143  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=180098
    144  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=555659
    145  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573020
    146  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=180099
    147  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573021
    148  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573022
    149  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573023
    150  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573024
    151  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573025
    152  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573026
    153  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573027
    154  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573028
    155  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573029
    156  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573030
    157  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573031
    158  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=944041
    159  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572861
    160  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572862
    161  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573032
    162  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=944263
    163  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573040
    164  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572890
    165  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572891
    166  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572902
    167  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572903
    168  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573081
    169  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573082
    170  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573033
    171  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572892
    172  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572863
    173  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572987
    174  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572988
    175  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572989
    176  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572990
    177  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572991
    178  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573083
    179  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573041
    180  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573042
    181  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573043
    182  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573044
    183  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573045
    184  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573046
    185  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573047
    186  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573048
    187  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=944230
    188  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=944235
    189  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=944238
    190  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=944239
    191  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573053
    192  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572883
    193  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572884
    194  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572885
    195  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=944258
    196  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=944259
    197  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=944260
    198  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573057
    199  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=945308
    200  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572923
    201  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=998616
    202  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572925
    203  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572926
    204  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572927
    205  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572928
    206  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572929
    207  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572930
    208  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572931
    209  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=998617
    210  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572933
    211 http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=1025098
    212  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572979
    213  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572980
    214  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=180095
    215  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572981
    216  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572982
    217  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573059
    218  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=945103
    219  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=944117
    220  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572906
    221  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=944115
    222  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=945107
    223  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573034
    224  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573060
    225  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573061
    226  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573062
    227  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573063
    228  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=944270
    229  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573065
    230  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573066
    231  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573067
    232  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=944269
    233  http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=572873

Because these are all from the same otus block anyway, we haven’t selected that column, but were it of interest it is also available in the taxa table.