KTIMPORTRDP(1)

NAME
ktImportRDP - explore hierarchical metagenomic data with zoomable pie charts

DESCRIPTION

    Creates a Krona chart from RDP classifications.

ktImportRDP \

    [options] \ rdp_details_1[,name_1] \ [rdp_details_2[,name_2]] \ ...

rdp_details
    RDP assignment details downloaded as text from the RDP Classifier web portal or output by the command line RDP Classifier or Multiclassifier. By default, separate datasets will be created for each input (see [-c]).

name
    A name to show in the list of datasets in the Krona chart (if multiple input files are present and [-c] is not specified). By default, the basename of the file will be used.

[-o <string>]
    Output file name. [Default: 'rdp.krona.html']

[-n <string>]
    Name of the highest level. [Default: 'root']

[-c]
    Combine data from each file, rather than creating separate datasets within the chart.

[-m <number>]
    Minimum confidence. Each query sequence will only be added to taxa that were predicted with a confidence score of at least this value.

[-d <integer>]
    Maximum depth of wedges to include in the chart.

[-x <integer>]
    Hue (0-360) for "bad" scores. [Default: '0']

[-y <integer>]
    Hue (0-360) for "good" scores. [Default: '120']

[-u <string>]
    URL of Krona resources to use instead of bundling them with the chart (e.g. "http://krona.sourceforge.net"). Reduces size of charts and allows updates, though charts will not work without access to this URL.

[-qp <string>]
    Url to send query IDs to (instead of listing them) for each wedge. The query IDs will be sent as a comma separated list in the POST variable "queries", with the current dataset index (from 0) in the POST variable "dataset". The url can include additional variables encoded via GET.